HARRISBURG, Pa. – In one of the biggest courtroom clashes between faith and evolution since the 1925 Scopes Monkey Trial, a federal judge barred a Pennsylvania public school district Tuesday from teaching “intelligent design” in biology class, saying the concept is creationism in disguise.

U.S. District Judge John E. Jones delivered a stinging attack on the Dover Area School Board, saying its first-in-the-nation decision in October 2004 to insert intelligent design into the science curriculum violated the constitutional separation of church and state.

The ruling was a major setback to the intelligent design movement, which also is waging battles in Georgia and Kansas. Intelligent design holds that living organisms are so complex that they must have been created by some kind of higher force.

Jones decried the “breathtaking inanity” of the Dover policy and accused several board members of lying to conceal their true motive, which he said was to promote religion.

A six-week trial over the issue yielded “overwhelming evidence” establishing that intelligent design “is a religious view, a mere relabeling of creationism, and not a scientific theory,” said Jones, a Republican and a churchgoer appointed to the federal bench three years ago.

The school system said it probably will not appeal the ruling, because several members who backed intelligent design were ousted in November’s elections and replaced with a new slate opposed to the policy.

During the trial, the board argued that it was trying improve science education by exposing students to alternatives to Charles Darwin’s theory of evolution and natural selection.

The policy required students to hear a statement about intelligent design before ninth-grade lessons on evolution. The statement said Darwin’s theory is “not a fact” and has inexplicable “gaps.” It referred students to an intelligent-design textbook, “Of Pandas and People.”

But the judge said: “We find that the secular purposes claimed by the board amount to a pretext for the board’s real purpose, which was to promote religion in the public school classroom.”

In 1987, the U.S. Supreme Court ruled that states cannot require public schools to balance evolution lessons by teaching creationism.

Eric Rothschild, an attorney for the families who challenged the policy, called the ruling “a real vindication for the parents who had the courage to stand up and say there was something wrong in their school district.”

Richard Thompson, president and chief counsel of the Thomas More Law Center in Ann Arbor, Mich., which represented the school district and describes its mission as defending the religious freedom of Christians, said the ruling appeared to be “an ad hominem attack on scientists who happen to believe in God.”

It was the latest chapter in a debate over the teaching of evolution dating back to the Scopes trial, in which Tennessee biology teacher John T. Scopes was fined $100 for violating a state law against teaching evolution.

Earlier this month, a federal appeals court in Georgia heard arguments over whether a suburban Atlanta school district had the right to put stickers on biology textbooks describing evolution as a theory, not fact. A federal judge last January ordered the stickers removed.

In November, state education officials in Kansas adopted new classroom science standards that call the theory of evolution into question.

President Bush also weighed in on the issue of intelligent design recently, saying schools should present the concept when teaching about the origins of life.

In his ruling, Jones said that while intelligent design, or ID, arguments “may be true, a proposition on which the court takes no position, ID is not science.” Among other things, the judge said intelligent design “violates the centuries-old ground rules of science by invoking and permitting supernatural causation”; it relies on “flawed and illogical” arguments; and its attacks on evolution “have been refuted by the scientific community.”

“The students, parents, and teachers of the Dover Area School District deserved better than to be dragged into this legal maelstrom, with its resulting utter waste of monetary and personal resources,” he wrote.

The judge also said: “It is ironic that several of these individuals, who so staunchly and proudly touted their religious convictions in public, would time and again lie to cover their tracks and disguise the real purpose behind the ID policy.”

Former school board member William Buckingham, who advanced the policy, said from his new home in Mount Airy, N.C., that he still feels the board did the right thing.

“I’m still waiting for a judge or anyone to show me anywhere in the Constitution where there’s a separation of church and state,” he said. “We didn’t lose; we were robbed.”

The controversy divided Dover and surrounding Dover Township, a rural area of nearly 20,000 residents about 20 miles south of Harrisburg. It galvanized voters in the Nov. 8 school board election to oust several members who supported the policy.

The new school board president, Bernadette Reinking, said the board intends to remove intelligent design from the science curriculum and place it in an elective social studies class. “As far as I can tell you, there is no intent to appeal,” she said.

Patrick Phillips, Maine’s deputy education commissioner, said in a telephone interview and by e-mail Tuesday that the Pennsylvania ruling helps the state “make important decisions about where content should most appropriately be studied.”

“The court ruling is not in Maine’s district and therefore does not bear directly on Maine educational case law,” he said.

Still, the decision helps make clear that “science is science and comparative religion and religious studies are quite different and we shouldn’t be confusing the two.”

There are numerous places in instructional programs where studies of comparative religion are appropriate and are part of a broad-based educational experience for students – for example, in social studies, anthropology, ethics and history classes, he said.

“On the other hand, to cloak science teaching in either intelligent design or scientific creationism or in other terms used over the years to mask religious intent isn’t appropriate,” Phillips said.

BDN writer Ruth-Ellen Cohen contributed to this report.